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I will do rna seq differential expression analysis in r with deseq2
Transforming biological data into actionable insights
I am a computational research specialist with a BSc in Biotechnology and MSc-level training in Medical Biochemistry, with experience in biostatistics, bioinformatics, and molecular modeling. I support...
About this Gig
I am a computational biologist with an MSc in Medical Biochemistry and research experience at A*STAR Singapore. I do RNA-seq analysis for researchers who have the data and need someone to make sense of it.
WHAT YOU GET
- Differential expression with DESeq2, correctly specified for your design
- Publication-ready figures at 300 dpi, in PNG and PDF
- A results table you can put straight into a supplementary file
- The analysis script, annotated, so you or your lab can rerun it
- A written interpretation, including what the data does NOT support
WHY THAT LAST POINT MATTERS
Reviewers ask why you filtered at a given threshold, whether you adjusted for batch, and why a sample was excluded. Everything I deliver is documented so you can answer those questions.
SEE THE STANDARD BEFORE YOU BUY
A full worked analysis of mine, code and figures and caveats, is public:
github.com/kND-17/hgsoc-origin-rnaseq
WHAT I NEED FROM YOU
Your counts matrix (or FASTQ files), a sample metadata sheet, and one sentence on what you want to find out. Message me before ordering if you are unsure which package fits and I will tell you honestly.
Domain:
Other
Expertise:
Other
Programming language:
Python
•
R
•
SQL
Tools:
Jupyter Notebook
•
Excel
Technology:
Python
•
R
•
Pandas
•
RStudio
My Portfolio
FAQ
Can you work from raw FASTQ files?
Yes, that is the Premium package. Basic and Standard assume you already have a counts matrix.
My data is unpublished and confidential. Is that a problem?
No. I do not share client data or reuse it, and I can delete it after delivery on request.
Will you be an author on the paper?
Only if you want me to be. Authorship or acknowledgement is entirely your call and is never a condition.
What if the analysis does not find anything significant?
You still get the full analysis, the figures and an honest write-up of what the data shows. A null result is a result, and I will not massage thresholds to manufacture one.
Can you handle single-cell data?
Not in this gig. Message me and I will tell you whether I can help or point you to someone who can.
