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I will perform microbiome and metagenomics data analysis
Microbiome Analysis, Grant Writing, Manuscript Editing, Immunology, Oncology
I'm a PhD researcher in cancer immunology and microbiome science at Laval University, Canada. Over the past 5 years I've been lucky to publish in journals like Nature Communications, contribute to fun...
About this Gig
Are you drowning in sequencing data but not sure how to analyze it properly?
I'm a PhD researcher in cancer immunology and microbiome science at Laval University, Canada. I've analyzed 16S rRNA and shotgun metagenomics data from clinical cohorts of 600+ samples, published in Nature Communications, and presented at 40+ international conferences. I know what reviewers expect and what makes figures publication-ready.
What I can analyze:
- 16S rRNA amplicon sequencing (DADA2, Phyloseq)
- Shotgun metagenomics (MetaPhlAn, Kraken/Bracken)
- Alpha & beta diversity analysis
- Differential abundance (LefSe, ANCOM-BC2, MaAsLin2)
- Functional pathways (HUMAnN)
- Metagenome assembly & functional annotation
- Bulk RNA-seq (host-microbiome interactions)
Tools: R, Python, DADA2, Phyloseq, MetaPhlAn, HUMAnN, HPC clusters
You will receive: Clean, fully reproducible analysis, Publication-ready figures (journal quality), Clear written interpretation of your results, All R and Python scripts used
Who I work with: PhD students, academic researchers, biotech startups, and clinical research teams across North America, Europe and Asia.
Not sure if your data fits? Message me first I'll tell you honestly what's possible.
My Portfolio
FAQ
What files do I need to provide?
Raw FASTQ files from your sequencer, along with a metadata file (sample info, groups, conditions). If you're unsure what to share, message me first and I'll guide you.
My data is from human clinical samples is that okay?
Yes, I regularly work with human clinical cohort data. Just ensure your data is anonymized and you have appropriate ethics approval on your end.
Do I need to know bioinformatics to work with you?
Not at all. I handle the entire analysis and explain the results in plain language. You just need to understand your biology, I handle the code.
What format will the figures be delivered in?
High-resolution PDF, SVG and PNG files, ready for journal submission. I can also adjust colors or layouts based on journal requirements.
Can you help me interpret the results for my manuscript?
Yes. All packages include a written biological interpretation. For the Standard and Premium packages I provide detailed discussion-ready text.
