I will handle bioinformatics grunt work
Turning messy data into clean, absorbable information
About this Gig
Bioinformatics work has a lot of tedious execution steps that don't show up in a paper's methods section but eat hours of your time:
- Running QC on raw sequencing files and interpreting the report
- Untangling messy file naming across dozens/hundreds of samples
- Fixing a pipeline step that keeps failing (Snakemake, Nextflow, or a custom script) due to format mismatches or environment issues.
- Formatting metadata for GEO/SRA submission
- Cross-referencing a gene/variant list against databases and compiling a clean annotated summary
This is the grunt work that's easy to describe but tedious and error-prone to actually execute, especially on real, messy, full-size files. I have hands-on experience running these tools and troubleshooting the inevitable edge cases.
Tell me what's breaking or what needs doing, and send a sample of your data. I'll tell you exactly what I can deliver and how fast.
Technology:
Python
•
RStudio
•
PowerShell
Expertise:
Data extraction
•
Data manipulation
