I will build a phylogenetic tree and analyze your amr gene sequences
Bioinformatics Analyst, AMR and Phylogenetics Specialist
About this Gig
Are you struggling to visualize the evolutionary relationships of your antimicrobial resistance (AMR) genes? I am a Master's student in Biochemistry and Molecular Biology with hands-on experience in public health molecular diagnostics. I combine my deep biological understanding with automated bioinformatics pipelines to provide you with publication-ready phylogenetic analysis.
What I will do for you:
- Automated sequence retrieval from NCBI (or work with your provided FASTA files).
- Multiple sequence alignment using Clustal Omega.
- Phylogenetic tree construction (Neighbor-Joining) with 100 bootstrap replicates.
- A clear, 1-page PDF report interpreting the biological significance (e.g., evidence of horizontal gene transfer or clonal expansion).
Why choose me?
I don't just click buttons in software. I write Python scripts (Biopython) that ensure your analysis is reproducible and fast. My wet-lab background in Antibiotic Susceptibility Testing (AST) and PCR means I understand the clinical context of your resistance genes, not just the code.
Deliverables:
- A high-resolution tree image.
- The aligned FASTA file.
- A PDF report with full methodology and interpretation.
Programming language:
Python
Technology:
Jupyter Notebook
Analysis Type:
Statistical Analysis
•
Predictive Analysis
Expertise:
Algorithms
•
Statistics
•
Cluster analysis
•
Other
Tools:
Jamovi
•
Google Colab
•
Microsoft Excel

