I will build a phylogenetic tree and analyze your amr gene sequences

Pakistan

I speak English, Urdu

Bioinformatics Analyst, AMR and Phylogenetics Specialist

I help researchers analyze their data efficiently by combining wet-lab molecular biology expertise with computational bioinformatics. As an MSc Biochemistry and Molecular Biology student, I bridge the...
About this Gig

Are you struggling to visualize the evolutionary relationships of your antimicrobial resistance (AMR) genes? I am a Master's student in Biochemistry and Molecular Biology with hands-on experience in public health molecular diagnostics. I combine my deep biological understanding with automated bioinformatics pipelines to provide you with publication-ready phylogenetic analysis.


What I will do for you:

  • Automated sequence retrieval from NCBI (or work with your provided FASTA files).
  • Multiple sequence alignment using Clustal Omega.
  • Phylogenetic tree construction (Neighbor-Joining) with 100 bootstrap replicates.
  • A clear, 1-page PDF report interpreting the biological significance (e.g., evidence of horizontal gene transfer or clonal expansion).

Why choose me?

I don't just click buttons in software. I write Python scripts (Biopython) that ensure your analysis is reproducible and fast. My wet-lab background in Antibiotic Susceptibility Testing (AST) and PCR means I understand the clinical context of your resistance genes, not just the code.


Deliverables:

  • A high-resolution tree image.
  • The aligned FASTA file.
  • A PDF report with full methodology and interpretation.

Programming language:

Python

Technology:

Jupyter Notebook

Analysis Type:

Statistical Analysis

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Predictive Analysis

Expertise:

Algorithms

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Statistics

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Cluster analysis

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Other

Tools:

Jamovi

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Google Colab

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Microsoft Excel

My Portfolio