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I will predict protein structure using alphafold and run docking analysis
Resume, CV And Cover Letter Writer Science And Academic Specialist
I help students, researchers, and professionals in two ways: crafting clear, ATS-friendly resumes, CVs, and cover letters, and delivering AlphaFold-based protein structure prediction and docking analy...
About this Gig
Need a 3D structure for a protein you are studying, but no experimental structure exists? I use AlphaFold (via ColabFold) to predict accurate 3D protein structures directly from your amino acid sequence, plus optional molecular docking and clean visualizations.
As a Microbiology and Molecular Genetics student, I understand the biology behind the data, not just the software, so I can help you interpret results, not just generate files.
What you get:
- A predicted 3D structure (PDB file) from your sequence
- Confidence scores (pLDDT) explained in plain language
- Optional docking analysis with a ligand or second protein
- Clean visualization images suitable for reports or presentations
- Source code and a written summary on higher tiers
Important: predicted structures are computational estimates, best suited for research, coursework, and hypothesis generation. For publication or clinical-grade certainty, experimental validation is still recommended, and I will always be upfront about confidence levels.
Message me with your sequence or PDB ID and what you are trying to find out. Happy to advise before you order!
Programming language:
Python
•
R
•
Colab
Frameworks:
Other
APIs:
Other
Tools:
Jupyter Notebook
•
Colab
•
Other
My Portfolio
FAQ
How accurate is AlphaFold's prediction?
Very accurate for many proteins, often near-experimental quality. I always report the confidence score (pLDDT) so you know how much to trust each region of the structure.
Is this a substitute for experimental structure determination?
No — it's a strong starting point for research and hypothesis generation, but publication or clinical use typically still requires experimental validation (X-ray/cryo-EM).
What's the difference between the packages?
Structure Prediction gives you the core 3D model. Prediction + Docking adds interaction analysis with a ligand or protein. Full Analysis Package includes everything plus source code and a detailed written report.
What file formats do I get?
A PDB file for the structure, PNG/JPG visualization images, and (on Standard/Premium) a written summary as PDF or Word.
Can you handle large proteins or protein complexes?
Yes, within reason — message me with your sequence length before ordering so I can confirm feasibility and turnaround.
Do you offer this for students on a tight budget?
Yes — the Structure Prediction package is priced specifically for coursework and student use.
