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I will perform bulk rnaseq deg and pathway analysis
Bioinformatics Genomics R Python ML and Scientific Writing
I am Saad, a bioinformatics and computational biology specialist focused on plant genomics, genome annotation, RNA-seq, data analysis, R, Python, and scientific writing. Through Saad Genomics Studio, ...
About this Gig
Welcome to my GiG,
Are you looking for accurate, reproducible and publication-ready bulk RNA-seq analysis?
I provide customized transcriptomic data analysis for researchers, laboratories and biotechnology professionals. I can work with raw count matrices or FASTQ files depending on the selected package.
Services may include:
- FASTQ quality control and MultiQC reporting
- Read trimming, alignment or transcript quantification
- Gene-level count generation
- Normalization, PCA and sample correlation
- Differential expression analysis
- Volcano plots, MA plots and heatmaps
- Gene Ontology and pathway enrichment
- Publication-ready figures and result tables
- R scripts and a clear interpretation report
I use established tools such as FastQC, MultiQC, STAR, HISAT2, Salmon, DESeq2, edgeR and clusterProfiler on Linux enviroment.
Please contact me before ordering for raw FASTQ files, non-model organisms, complex designs or more than 12 samples. Results depend on data quality and experimental design.
My Portfolio
FAQ
Do you accept raw FASTQ files?
Yes. FASTQ processing is included in the Premium package or can be provided through a custom offer. Please send the number of samples, sequencing type and approximate file sizes before ordering.
Can you analyze an existing count matrix?
Yes. Please provide the raw integer count matrix, sample metadata and the comparisons you want to perform.
Which organisms can you analyze?
I can analyze plant, microbial, animal and human datasets when suitable reference genome, transcriptome and annotation resources are available.
Will you provide publication-ready figures?
Yes. Figures may be delivered in PNG, TIFF, PDF or SVG format according to your selected package and publication requirements.
Will you provide the analysis code?
Analysis scripts are included in the Standard and Premium packages. They may also be added to the Basic package as an extra.
Do you guarantee significant genes or pathways?
No. Results depend on sample quality, sequencing depth, biological variation and experimental design. I provide transparent analysis without manipulating or fabricating results.
