I will process and analyze your genomics or vcf data using python

Pakistan

I speak Urdu, English, Punjabi

Python Developer Bioinformatics Data Analyst

Python developer & bioinformatics analyst with hands-on experience delivering data solutions across research and industry settings. I specialize in: - Python scripting for data cleaning, automation ...
About this Gig

Do you have genomics data that needs processing, filtering, or 

annotation but don't know where to start?


I will build a reliable bioinformatics pipeline to process your 

VCF, BCF, or GWAS data using industry-standard tools delivering 

clean, annotated, analysis-ready results.


What I can do:

VCF/BCF file processing and format conversion

Variant filtering by quality, depth, and allele frequency

SNP annotation using Ensembl VEP

PLINK-based GWAS data processing

bcftools QC stats and summary reports

File format conversions (VCF, BCF, PLINK, haps/sample)

Python automation of full pipeline workflows

Data visualization of variant distributions and quality metrics


What you'll receive:

Processed, filtered output files

QC summary report

Python pipeline script (clean, commented, reusable)

Clear documentation and usage instructions


I work with bcftools, tabix, PLINK, Ensembl VEP, and Python 

the same tools used in production GWAS and genomics research pipelines.


Message me before ordering to describe your dataset and goals.

Technology:

Excel

Jupyter Notebook

Pandas

RStudio

MySQL

Streamlit

Analysis type:

Quantitative analysis

Statistical analysis

Expertise:

Experiment design

Trends

Algorithms

Prediction

Programming language:

Python

R

SQL

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